Uses the output of modelEstimation in the EGRET package (results in the named list eList), and the data frame CIAnnualResults (produced by the function ciCalculations in the EGRETci package using scripts described in the EGRETci vignette) to produce a graph of annual concentration, flow normalized concentration, and confidence bands for flow-normalized concentrations. In addition to the arguments listed below, it will accept any additional arguments that are listed for the EGRET function plotConcHist.

plotConcHistBoot(eList, CIAnnualResults, yearStart = NA, yearEnd = NA,
  plotFlowNorm = TRUE, col.pred = "green", concMax = NA,
  plotAnnual = TRUE, plotGenConc = FALSE, cex = 0.8, cex.axis = 1.1,
  lwd = 2, col = "black", col.gen = "red", customPar = FALSE,
  printTitle = TRUE, cex.main = 1.1, ...)

Arguments

eList

named list with at least the Daily, Sample, and INFO dataframes. Created from the EGRET package, after running modelEstimation.

CIAnnualResults

data frame generated from ciBands (includes nBoot, probs, and blockLength attributes).

yearStart

numeric is the calendar year containing the first estimated annual value to be plotted, default is NA (which allows it to be set automatically by the data).

yearEnd

numeric is the calendar year just after the last estimated annual value to be plotted, default is NA (which allows it to be set automatically by the data).

plotFlowNorm

logical variable if TRUE flow normalized concentration line is plotted, if FALSE not plotted, default is TRUE.

col.pred

character color of line for flow-normalized concentration and for the confidence limits, default is "green".

concMax

numeric specifying the maximum value to be used on the vertical axis, default is NA (which allows it to be set automatically by the data).

plotAnnual

logical variable if TRUE, annual mean concentration points from WRTDS output are plotted, if FALSE not plotted.

plotGenConc

logical variable. If TRUE, annual mean concentration points from WRTDS_K output are plotted, if FALSE not plotted.

cex

numeric value giving the amount by which plotting symbols should be magnified, default = 0.8.

cex.axis

numeric value of magnification to be used for axis annotation relative to the current setting of cex, default = 1.1.

lwd

numeric magnification of line width, default = 2.

col

color of annual mean points on plot, see ?par 'Color Specification', default = "black".

col.gen

color of annual mean points for WRTDS_K output on plot, see ?par 'Color Specification', default = "red".

customPar

logical defaults to FALSE. If TRUE, par() should be set by user before calling this function (for example, adjusting margins with par(mar=c(5,5,5,5))). If customPar FALSE, EGRETci chooses the best margins.

printTitle

logical print title of the plot, default = TRUE.

cex.main

numeric value of magnification to be used for plot title, default = 1.1.

...

graphical parameters

Examples

library(EGRET) eList <- Choptank_eList CIAnnualResults <- Choptank_CIAnnualResults plotConcHistBoot(eList, CIAnnualResults)
plotConcHistBoot(eList, CIAnnualResults, yearStart=1990, yearEnd=2002)
# Very long-running function: if (FALSE) { CIAnnualResults <- ciCalculations(eList, nBoot = 100, blockLength = 200) plotConcHistBoot(eList, CIAnnualResults) }